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Primers and PCR conditions were published previously However, due to the highly degraded DNA quality of P. To obtain a complete mitochondrial genome of P. For consistency, Illumina sequencing was also performed for P. Contemporary DNA samples P. Data trimming was performed with default parameters using the AdapterRemoval2 tool version 2. K-mer size and Depth-cutoff were set automatically by Norgal The obtained annotation was then used to define partitions in the subsequent phylogenetic analysis.

The phylogenetic analysis for cytB sequences was performed for the P. The sequence of cytB from starry sturgeon A. The phylogenetic analyses of the whole mitogenome sequences excluding control region and NADH4L gene were performed for the P. As an outgroup, we used complete mitochondrial genomes of starry sturgeon — A. The haplotype network of the cytB gene was built by R package Pegas. The alignment of the cytB gene of eleven Pseudoscaphirhynchus specimens and one A.

Genetic distances of the sequences were estimated by the dist. The haplotypes were extracted from DNA-alignment using the haplotype function of the Pegas package, and plotted with the haploNet Pegas function The genetic distances were estimated by the dist.

Ceballos, G. Biological annihilation via the ongoing sixth mass extinction signaled by vertebrate population losses and declines. Der Sarkissian, C. Diez-Del-Molino, D. Trends Ecol Evol 33 , —, doi:S 17 [pii]. Levin, B. High-throughput sequencing of the mitochondrial genomes from archived fish scales: an example of the endangered putative species flock of Sevan trout Salmo ischchan.

Sharko, F. Phylogenetic position of the presumably extinct slender-billed curlew, Numenius tenuirostris. Nelson, J. Fishes of the World. Raymakers, C. Rastorguev, S. Dillman, C. Molecular systematics of Scaphirhynchinae: an assessment of North American and Central Asian freshwater sturgeon species. Mugue, N. Complete mitochondrial genomes of the critically endangered Ship sturgeon Acipenser nudiventris from two seas.

Zholdasova, I. Sturgeons and the Aral Sea ecological catastrophe. Micklin, P. The Aral Sea disaster. Earth Pl. Birstein, V. Molecular phylogeny of Acipenseridae: Nonmonophyly of Scaphirhynchinae. Copeia , —, doi Co;2 Phylogeny of the Acipenseriformes: Cytogenetic and molecular approaches.

Introduction

Hilton, E. Observations on the skulls of sturgeons Acipenseridae : shared similarities of Pseudoscaphirhynchus kaufmanni and juvenile specimens of Acipenser stellatus. Berg, L. Freshwater fishes of the U. Peng, Z. Age and biogeography of major clades in sturgeons and paddlefishes Pisces: Acipenseriformes. Sagitov, N. On the dwarf form of the large Amu-Darya shovelnose sturgeon.

Nauchnye Doklady Vysshei Shkoly 6 , 12—15 Google Scholar. Orlando, L. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Schubert, M. AdapterRemoval v2: rapid adapter trimming, identification, and read merging. BMC Res. Al-Nakeeb, K. Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data.

Bmc Bioinforma.

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Iwasaki, W. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Arnason, U. Mitogenomic analyses of deep gnathostome divergences: a fish is a fish.

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Kumar, S. Nguyen, L. Paradis, E. Hasegawa, M. Download references. This work was. Fedor S. Correspondence to Artem V. Reprints and Permissions. Nedoluzhko, A. Molecular phylogeny of one extinct and two critically endangered Central Asian sturgeon species genus Pseudoscaphirhynchus based on their mitochondrial genomes. Sci Rep 10, Download citation. Received : 23 November Accepted : 03 January Published : 20 January Journal of Forest Research Journal of Applied Ichthyology By submitting a comment you agree to abide by our Terms and Community Guidelines.

If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate. Advanced search.

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily. Skip to main content Thank you for visiting nature. Download PDF. Subjects Evolutionary biology Molecular evolution Phylogenetics. Abstract The enigmatic and poorly studied sturgeon genus Pseudoscaphirhynchus Scaphirhynchinae: Acipenseridae comprises three species: the Amu Darya shovelnose sturgeon Pseudoscaphirhynchus kaufmanni Bogdanow , dwarf Amu Darya shovelnose sturgeon P.

Introduction The animal diversity and classification remain complex with new species being continuously discovered and described. Figure 1.

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Full size image. Results and Discussion We obtained four complete mitochondrial genomes of shovelnose sturgeon specimens, belonging to three Pseudoscaphirhynchus species. Table 1 Illumina generated reads and the mitochondrial genome size of the Pseudoscaphirhynchus species. Love is,like a butterfly,difficult to catch and very easy to lose.

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